Detailed information of SNP:
|
SNP ID:
sf0912249613(Gbrowse)
Chromosome: chr09 Position: 12249613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 88.09% | 11.91% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 490 | 81.43% | 18.57% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 65 | 64.62% | 35.38% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912249613 | C->T | INTERGENIC | None |