Detailed information of SNP:



SNP ID: sf0912263985(Gbrowse)

Chromosome: chr09

Position: 12263985
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1392 97.77% 2.23%
All Indica799 100.00% 0.00%
All Japonica472 93.43% 6.57%
Aus66 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica322 90.99% 9.01%
Tropical Japonica87 100.00% 0.00%
Japonica Intermediate63 96.83% 3.17%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0912263985 G->A LOC_Os09g20400(LOC_Os09g20400.1) INTRON