Detailed information of SNP:
|
SNP ID:
sf0912271938(Gbrowse)
Chromosome: chr09 Position: 12271938 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 55.53% | 44.47% |
| All Indica | 790 | 22.66% | 77.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 4.62% | 95.38% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 209 | 12.44% | 87.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912271938 | G->A | INTERGENIC | None |