Detailed information of SNP:
|
SNP ID:
sf0912278301(Gbrowse)
Chromosome: chr09 Position: 12278301 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 95.21% | 4.79% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 464 | 87.07% | 12.93% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 98.75% | 1.25% |
| Tropical Japonica | 83 | 49.40% | 50.60% |
| Japonica Intermediate | 61 | 77.05% | 22.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912278301 | A->C | INTERGENIC | None |