Detailed information of SNP:
|
SNP ID:
sf0912299483(Gbrowse)
Chromosome: chr09 Position: 12299483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 63.09% | 36.91% |
| All Indica | 734 | 34.20% | 65.80% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 344 | 20.93% | 79.07% |
| Indica II | 195 | 68.21% | 31.79% |
| Indica Intermediate | 195 | 23.59% | 76.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912299483 | C->T | INTERGENIC | None |