Detailed information of SNP:
|
SNP ID:
sf0912299787(Gbrowse)
Chromosome: chr09 Position: 12299787 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.17% | 43.83% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912299787 | T->C | INTERGENIC | None |