Detailed information of SNP:
|
SNP ID:
sf0912340272(Gbrowse)
Chromosome: chr09 Position: 12340272 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.49% | 40.51% |
| All Indica | 799 | 30.41% | 69.59% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 13.87% | 86.13% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912340272 | G->T | INTERGENIC | None |