Detailed information of SNP:
|
SNP ID:
sf0912340414(Gbrowse)
Chromosome: chr09 Position: 12340414 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 91.64% | 8.36% |
| All Indica | 780 | 88.85% | 11.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 56.90% | 43.10% |
| Indica I | 363 | 93.39% | 6.61% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912340414 | G->T | INTERGENIC | None |