Detailed information of SNP:
|
SNP ID:
sf0912340423(Gbrowse)
Chromosome: chr09 Position: 12340423 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 90.88% | 9.12% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 57.89% | 42.11% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912340423 | G->A | INTERGENIC | None |