Detailed information of SNP:
|
SNP ID:
sf0912354267(Gbrowse)
Chromosome: chr09 Position: 12354267 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912354267 | T->C | INTERGENIC | None |