Detailed information of SNP:



SNP ID: sf0912446595(Gbrowse)

Chromosome: chr09

Position: 12446595
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 94.89% 5.11%
All Indica793 92.81% 7.19%
All Japonica497 100.00% 0.00%
Aus62 80.65% 19.35%
Indica I373 91.42% 8.58%
Indica II212 96.70% 3.30%
Indica Intermediate208 91.35% 8.65%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0912446595 C->T LOC_Os09g20670(LOC_Os09g20670.1) Synonymous