Detailed information of SNP:
|
SNP ID:
sf0912446595(Gbrowse)
Chromosome: chr09 Position: 12446595 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.89% | 5.11% |
| All Indica | 793 | 92.81% | 7.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912446595 | C->T | LOC_Os09g20670(LOC_Os09g20670.1) | Synonymous |