Detailed information of SNP:
|
SNP ID:
sf0912447060(Gbrowse)
Chromosome: chr09 Position: 12447060 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 54.27% | 45.73% |
| All Indica | 731 | 94.25% | 5.75% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 155 | 90.32% | 9.68% |
| Indica Intermediate | 202 | 97.52% | 2.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912447060 | T->C | INTERGENIC | None |