Detailed information of SNP:
|
SNP ID:
sf0912498540(Gbrowse)
Chromosome: chr09 Position: 12498540 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1264 | 57.52% | 42.48% |
| All Indica | 658 | 29.94% | 70.06% |
| All Japonica | 491 | 95.52% | 4.48% |
| Aus | 63 | 44.44% | 55.56% |
| Indica I | 292 | 36.30% | 63.70% |
| Indica II | 181 | 27.62% | 72.38% |
| Indica Intermediate | 185 | 22.16% | 77.84% |
| Temperate Japonica | 331 | 96.98% | 3.02% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912498540 | C->G | INTERGENIC | None |