Detailed information of SNP:
|
SNP ID:
sf0912500908(Gbrowse)
Chromosome: chr09 Position: 12500908 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.13% | 14.87% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912500908 | A->C | INTERGENIC | None |