Detailed information of SNP:
|
SNP ID:
sf0912515800(Gbrowse)
Chromosome: chr09 Position: 12515800 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 87.94% | 12.06% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912515800 | T->C | LOC_Os09g20770(LOC_Os09g20770.1) | INTRON |