Detailed information of SNP:
|
SNP ID:
sf0912630852(Gbrowse)
Chromosome: chr09 Position: 12630852 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 798 | 28.20% | 71.80% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 9.60% | 90.40% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 27.62% | 72.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912630852 | C->T | INTERGENIC | None |