Detailed information of SNP:
|
SNP ID:
sf0912632838(Gbrowse)
Chromosome: chr09 Position: 12632838 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 90.42% | 9.58% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 473 | 77.17% | 22.83% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 92.97% | 7.03% |
| Tropical Japonica | 87 | 32.18% | 67.82% |
| Japonica Intermediate | 59 | 55.93% | 44.07% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912632838 | C->T | INTERGENIC | None |