Detailed information of SNP:
|
SNP ID:
sf0912639699(Gbrowse)
Chromosome: chr09 Position: 12639699 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 51.52% | 48.48% |
| All Indica | 794 | 86.78% | 13.22% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 24.39% | 75.61% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912639699 | C->T | INTERGENIC | None |