Detailed information of SNP:
|
SNP ID:
sf0912644941(Gbrowse)
Chromosome: chr09 Position: 12644941 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 88.55% | 11.45% |
| All Indica | 729 | 79.15% | 20.85% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 330 | 67.88% | 32.12% |
| Indica II | 203 | 89.16% | 10.84% |
| Indica Intermediate | 196 | 87.76% | 12.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912644941 | C->T | LOC_Os09g20990(LOC_Os09g20990.1) | Non-Synonymous SNP |