Detailed information of SNP:
|
SNP ID:
sf0912674776(Gbrowse)
Chromosome: chr09 Position: 12674776 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 97.40% | 2.60% |
| All Indica | 770 | 95.32% | 4.68% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 94.41% | 5.59% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912674776 | A->G | INTERGENIC | None |