Detailed information of SNP:
|
SNP ID:
sf0912681053(Gbrowse)
Chromosome: chr09 Position: 12681053 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 98.35% | 1.65% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 471 | 95.54% | 4.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 94.32% | 5.68% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912681053 | C->T | LOC_Os09g21020(LOC_Os09g21020.1) | INTRON |