Detailed information of SNP:
|
SNP ID:
sf0912738405(Gbrowse)
Chromosome: chr09 Position: 12738405 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 91.09% | 8.91% |
| All Indica | 796 | 89.57% | 10.43% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912738405 | G->T | INTERGENIC | None |