Detailed information of SNP:
|
SNP ID:
sf0912813460(Gbrowse)
Chromosome: chr09 Position: 12813460 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 55.86% | 44.14% |
| All Indica | 792 | 90.66% | 9.34% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912813460 | G->A | INTERGENIC | None |