Detailed information of SNP:



SNP ID: sf0912863928(Gbrowse)

Chromosome: chr09

Position: 12863928
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 62.09% 37.91%
All Indica799 97.50% 2.50%
All Japonica497 3.02% 96.98%
Aus67 95.52% 4.48%
Indica I375 99.73% 0.27%
Indica II213 97.18% 2.82%
Indica Intermediate211 93.84% 6.16%
Temperate Japonica335 2.39% 97.61%
Tropical Japonica94 7.45% 92.55%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 47.62% 52.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0912863928 C->T INTERGENIC None