Detailed information of SNP:
SNP ID:
sf0912863928(Gbrowse)
Chromosome: chr09 Position: 12863928 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 62.09% | 37.91% |
All Indica | 799 | 97.50% | 2.50% |
All Japonica | 497 | 3.02% | 96.98% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 97.18% | 2.82% |
Indica Intermediate | 211 | 93.84% | 6.16% |
Temperate Japonica | 335 | 2.39% | 97.61% |
Tropical Japonica | 94 | 7.45% | 92.55% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0912863928 | C->T | INTERGENIC | None |