Detailed information of SNP:
|
SNP ID:
sf0912891253(Gbrowse)
Chromosome: chr09 Position: 12891253 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912891253 | C->A | LOC_Os09g21350(LOC_Os09g21350.1) | Non-Synonymous SNP |