Detailed information of SNP:
|
SNP ID:
sf0912900939(Gbrowse)
Chromosome: chr09 Position: 12900939 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1324 | 86.78% | 13.22% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 404 | 58.42% | 41.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 269 | 41.64% | 58.36% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 53 | 81.13% | 18.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912900939 | C->G | INTERGENIC | None |