Detailed information of SNP:
|
SNP ID:
sf0912904422(Gbrowse)
Chromosome: chr09 Position: 12904422 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.08% | 6.92% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912904422 | G->A | INTERGENIC | None |