Detailed information of SNP:
|
SNP ID:
sf0912924803(Gbrowse)
Chromosome: chr09 Position: 12924803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 93.34% | 6.66% |
| All Indica | 793 | 93.57% | 6.43% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912924803 | C->T | INTERGENIC | None |