Detailed information of SNP:
|
SNP ID:
sf0912927456(Gbrowse)
Chromosome: chr09 Position: 12927456 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 67.32% | 32.68% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 465 | 6.02% | 93.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 3.18% | 96.82% |
| Tropical Japonica | 86 | 13.95% | 86.05% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912927456 | T->C | INTERGENIC | None |