Detailed information of SNP:
|
SNP ID:
sf0912945766(Gbrowse)
Chromosome: chr09 Position: 12945766 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1301 | 94.16% | 5.84% |
| All Indica | 683 | 88.87% | 11.13% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 303 | 86.14% | 13.86% |
| Indica II | 192 | 96.88% | 3.12% |
| Indica Intermediate | 188 | 85.11% | 14.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912945766 | G->A | INTERGENIC | None |