Detailed information of SNP:
|
SNP ID:
sf0913006990(Gbrowse)
Chromosome: chr09 Position: 13006990 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.64% | 5.36% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913006990 | A->G | INTERGENIC | None |