Detailed information of SNP:
|
SNP ID:
sf0913072378(Gbrowse)
Chromosome: chr09 Position: 13072378 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1223 | 91.50% | 8.50% |
| All Indica | 637 | 90.89% | 9.11% |
| All Japonica | 487 | 94.87% | 5.13% |
| Aus | 48 | 62.50% | 37.50% |
| Indica I | 309 | 94.17% | 5.83% |
| Indica II | 162 | 85.80% | 14.20% |
| Indica Intermediate | 166 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913072378 | A->G | INTERGENIC | None |