Detailed information of SNP:
|
SNP ID:
sf0913079415(Gbrowse)
Chromosome: chr09 Position: 13079415 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 97.07% | 2.93% |
| All Indica | 792 | 97.73% | 2.27% |
| All Japonica | 486 | 95.88% | 4.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 62 | 95.16% | 4.84% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913079415 | A->G | LOC_Os09g21600(LOC_Os09g21600.1) | Synonymous |