Detailed information of SNP:
|
SNP ID:
sf0913079856(Gbrowse)
Chromosome: chr09 Position: 13079856 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 58.90% | 41.10% |
| All Indica | 746 | 80.97% | 19.03% |
| All Japonica | 473 | 21.99% | 78.01% |
| Aus | 58 | 60.34% | 39.66% |
| Indica I | 350 | 86.00% | 14.00% |
| Indica II | 199 | 80.40% | 19.60% |
| Indica Intermediate | 197 | 72.59% | 27.41% |
| Temperate Japonica | 327 | 9.48% | 90.52% |
| Tropical Japonica | 83 | 67.47% | 32.53% |
| Japonica Intermediate | 63 | 26.98% | 73.02% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913079856 | C->T | LOC_Os09g21600(LOC_Os09g21600.1) | INTRON |