Detailed information of SNP:
|
SNP ID:
sf0913082923(Gbrowse)
Chromosome: chr09 Position: 13082923 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 99.15% | 0.85% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 97.96% | 2.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913082923 | T->C | LOC_Os09g21610(LOC_Os09g21610.1) | Synonymous |