Detailed information of SNP:
|
SNP ID:
sf0913095919(Gbrowse)
Chromosome: chr09 Position: 13095919 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 81.94% | 18.06% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 494 | 51.42% | 48.58% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 70.27% | 29.73% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913095919 | A->T | INTERGENIC | None |