Detailed information of SNP:
|
SNP ID:
sf0913197486(Gbrowse)
Chromosome: chr09 Position: 13197486 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 96.17% | 3.83% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 411 | 88.08% | 11.92% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 94.62% | 5.38% |
| Tropical Japonica | 48 | 62.50% | 37.50% |
| Japonica Intermediate | 47 | 70.21% | 29.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913197486 | T->A | INTERGENIC | None |