Detailed information of SNP:
|
SNP ID:
sf0913243555(Gbrowse)
Chromosome: chr09 Position: 13243555 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 71.16% | 28.84% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 430 | 12.33% | 87.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 6.23% | 93.77% |
| Tropical Japonica | 62 | 38.71% | 61.29% |
| Japonica Intermediate | 47 | 19.15% | 80.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913243555 | A->G | LOC_Os09g21860(LOC_Os09g21860.1) | Non-Synonymous SNP |