Detailed information of SNP:
|
SNP ID:
sf0913384026(Gbrowse)
Chromosome: chr09 Position: 13384026 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 98.16% | 1.84% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 385 | 94.03% | 5.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 235 | 91.49% | 8.51% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 94.74% | 5.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913384026 | T->G | LOC_Os09g22100(LOC_Os09g22100.1) | INTRON |