Detailed information of SNP:
|
SNP ID:
sf0913443403(Gbrowse)
Chromosome: chr09 Position: 13443403 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 98.13% | 1.87% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 473 | 94.71% | 5.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 95.78% | 4.22% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 61 | 83.61% | 16.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913443403 | C->T | LOC_Os09g22230(LOC_Os09g22230.1) | Synonymous |