Detailed information of SNP:
|
SNP ID:
sf0913481727(Gbrowse)
Chromosome: chr09 Position: 13481727 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 91.65% | 8.35% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 388 | 73.71% | 26.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 233 | 60.09% | 39.91% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 61 | 86.89% | 13.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913481727 | A->G | INTERGENIC | None |