Detailed information of SNP:
|
SNP ID:
sf0913498936(Gbrowse)
Chromosome: chr09 Position: 13498936 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.63% | 44.37% |
| All Indica | 792 | 93.94% | 6.06% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913498936 | A->G | INTERGENIC | None |