Detailed information of SNP:
|
SNP ID:
sf0913501350(Gbrowse)
Chromosome: chr09 Position: 13501350 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 92.15% | 7.85% |
| All Indica | 774 | 88.89% | 11.11% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 368 | 89.13% | 10.87% |
| Indica II | 201 | 89.05% | 10.95% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913501350 | G->A | INTERGENIC | None |