Detailed information of SNP:
|
SNP ID:
sf0913501386(Gbrowse)
Chromosome: chr09 Position: 13501386 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 94.20% | 5.80% |
| All Indica | 781 | 91.81% | 8.19% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913501386 | C->T | INTERGENIC | None |