Detailed information of SNP:
|
SNP ID:
sf0913503135(Gbrowse)
Chromosome: chr09 Position: 13503135 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 50.60% | 49.40% |
| All Indica | 792 | 79.17% | 20.83% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 371 | 72.78% | 27.22% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913503135 | T->C | INTERGENIC | None |