Detailed information of SNP:
|
SNP ID:
sf0913503450(Gbrowse)
Chromosome: chr09 Position: 13503450 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 83.61% | 16.39% |
| All Indica | 746 | 72.39% | 27.61% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 347 | 66.28% | 33.72% |
| Indica II | 204 | 81.37% | 18.63% |
| Indica Intermediate | 195 | 73.85% | 26.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913503450 | C->A | INTERGENIC | None |