Detailed information of SNP:
|
SNP ID:
sf0913503479(Gbrowse)
Chromosome: chr09 Position: 13503479 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 94.39% | 5.61% |
| All Indica | 790 | 91.52% | 8.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 207 | 85.02% | 14.98% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913503479 | G->C | INTERGENIC | None |