Detailed information of SNP:
|
SNP ID:
sf0913503505(Gbrowse)
Chromosome: chr09 Position: 13503505 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 52.95% | 47.05% |
| All Indica | 759 | 82.74% | 17.26% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 351 | 78.92% | 21.08% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913503505 | C->T | INTERGENIC | None |