Detailed information of SNP:
|
SNP ID:
sf0913504388(Gbrowse)
Chromosome: chr09 Position: 13504388 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 97.76% | 2.24% |
| All Indica | 768 | 96.88% | 3.12% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913504388 | T->C | INTERGENIC | None |