Detailed information of SNP:
|
SNP ID:
sf0913514819(Gbrowse)
Chromosome: chr09 Position: 13514819 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 52.77% | 47.23% |
| All Indica | 755 | 81.32% | 18.68% |
| All Japonica | 495 | 2.63% | 97.37% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 342 | 73.10% | 26.90% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 201 | 83.08% | 16.92% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0913514819 | T->G | INTERGENIC | None |